Enhance cleanup of keyrings and repo configs for tools

Expanded the removal of GPG keyrings and repository configuration files for MariaDB, MySQL, MongoDB, Node.js, PHP, PostgreSQL, Java (Adoptium), and ClickHouse in both removal and setup functions. This ensures all possible keyring locations are cleaned before new installations, reducing risk of conflicts and improving idempotency. Also improved PHP-FPM service cleanup and added version verification for MongoDB setup.

misc/tools.func

@@ -112,55 +112,101 @@ remove_old_tool_version() {
   mariadb)
     $STD systemctl stop mariadb >/dev/null 2>&1 || true
     $STD apt purge -y 'mariadb*' >/dev/null 2>&1 || true
+    # Clean up ALL keyring locations
+    rm -f /usr/share/keyrings/mariadb*.gpg \
+      /etc/apt/keyrings/mariadb*.gpg \
+      /etc/apt/trusted.gpg.d/mariadb*.gpg 2>/dev/null || true
     ;;
   mysql)
     $STD systemctl stop mysql >/dev/null 2>&1 || true
     $STD apt purge -y 'mysql*' >/dev/null 2>&1 || true
-    rm -rf /var/lib/mysql >/dev/null 2>&1 || true
+    rm -rf /var/lib/mysql 2>/dev/null || true
+    # Clean up ALL keyring locations
+    rm -f /usr/share/keyrings/mysql*.gpg \
+      /etc/apt/keyrings/mysql*.gpg \
+      /etc/apt/trusted.gpg.d/mysql*.gpg 2>/dev/null || true
     ;;
   mongodb)
     $STD systemctl stop mongod >/dev/null 2>&1 || true
     $STD apt purge -y 'mongodb*' >/dev/null 2>&1 || true
-    rm -rf /var/lib/mongodb >/dev/null 2>&1 || true
+    rm -rf /var/lib/mongodb 2>/dev/null || true
+    # Clean up ALL keyring locations
+    rm -f /usr/share/keyrings/mongodb*.gpg \
+      /etc/apt/keyrings/mongodb*.gpg \
+      /etc/apt/trusted.gpg.d/mongodb*.gpg 2>/dev/null || true
     ;;
   node | nodejs)
     $STD apt purge -y nodejs npm >/dev/null 2>&1 || true
-    npm list -g 2>/dev/null | grep -oE '^  \S+' | awk '{print $1}' | while read -r module; do
+    # Clean up npm global modules
-      npm uninstall -g "$module" >/dev/null 2>&1 || true
+    if command -v npm >/dev/null 2>&1; then
-    done
+      npm list -g 2>/dev/null | grep -oE '^  \S+' | awk '{print $1}' | while read -r module; do
+        npm uninstall -g "$module" >/dev/null 2>&1 || true
+      done
+    fi
+    # Clean up nvm installations and npm caches
+    rm -rf "$HOME/.nvm" "$HOME/.npm" "$HOME/.bower" "$HOME/.config/yarn" 2>/dev/null || true
+    sed -i '/NVM_DIR/d' "$HOME/.bashrc" "$HOME/.profile" 2>/dev/null || true
+    # Clean up ALL keyring locations
+    rm -f /usr/share/keyrings/nodesource*.gpg \
+      /etc/apt/keyrings/nodesource*.gpg \
+      /etc/apt/trusted.gpg.d/nodesource*.gpg 2>/dev/null || true
     ;;
   php)
-    # Disable PHP-FPM if running
+    # Stop and disable ALL PHP-FPM versions
-    $STD systemctl disable php*-fpm >/dev/null 2>&1 || true
+    for fpm_service in $(systemctl list-units --type=service --all | grep -oE 'php[0-9]+\.[0-9]+-fpm' | sort -u); do
-    $STD systemctl stop php*-fpm >/dev/null 2>&1 || true
+      $STD systemctl stop "$fpm_service" >/dev/null 2>&1 || true
+      $STD systemctl disable "$fpm_service" >/dev/null 2>&1 || true
+    done
     $STD apt purge -y 'php*' >/dev/null 2>&1 || true
-    rm -rf /etc/php >/dev/null 2>&1 || true
+    rm -rf /etc/php 2>/dev/null || true
+    # Clean up ALL keyring locations (Sury PHP)
+    rm -f /usr/share/keyrings/deb.sury.org-php.gpg \
+      /usr/share/keyrings/php*.gpg \
+      /etc/apt/keyrings/php*.gpg \
+      /etc/apt/trusted.gpg.d/php*.gpg 2>/dev/null || true
     ;;
   postgresql)
     $STD systemctl stop postgresql >/dev/null 2>&1 || true
     $STD apt purge -y 'postgresql*' >/dev/null 2>&1 || true
-    rm -rf /var/lib/postgresql >/dev/null 2>&1 || true
+    # Keep data directory for safety (can be removed manually if needed)
+    # rm -rf /var/lib/postgresql 2>/dev/null || true
+    # Clean up ALL keyring locations
+    rm -f /usr/share/keyrings/postgresql*.gpg \
+      /usr/share/keyrings/pgdg*.gpg \
+      /etc/apt/keyrings/postgresql*.gpg \
+      /etc/apt/keyrings/pgdg*.gpg \
+      /etc/apt/trusted.gpg.d/postgresql*.gpg \
+      /etc/apt/trusted.gpg.d/pgdg*.gpg 2>/dev/null || true
+    ;;
+  java)
+    $STD apt purge -y 'temurin*' 'adoptium*' 'openjdk*' >/dev/null 2>&1 || true
+    # Clean up ALL keyring locations (Adoptium)
+    rm -f /usr/share/keyrings/adoptium*.gpg \
+      /etc/apt/keyrings/adoptium*.gpg \
+      /etc/apt/trusted.gpg.d/adoptium*.gpg 2>/dev/null || true
     ;;
   ruby)
-    if [[ -d "$HOME/.rbenv" ]]; then
+    rm -rf "$HOME/.rbenv" 2>/dev/null || true
-      rm -rf "$HOME/.rbenv"
-    fi
     $STD apt purge -y 'ruby*' >/dev/null 2>&1 || true
     ;;
   rust)
-    rm -rf "$HOME/.cargo" "$HOME/.rustup" >/dev/null 2>&1 || true
+    rm -rf "$HOME/.cargo" "$HOME/.rustup" 2>/dev/null || true
     ;;
   go | golang)
-    rm -rf /usr/local/go >/dev/null 2>&1 || true
+    rm -rf /usr/local/go 2>/dev/null || true
     ;;
   clickhouse)
     $STD systemctl stop clickhouse-server >/dev/null 2>&1 || true
     $STD apt purge -y 'clickhouse*' >/dev/null 2>&1 || true
-    rm -rf /var/lib/clickhouse >/dev/null 2>&1 || true
+    rm -rf /var/lib/clickhouse 2>/dev/null || true
+    # Clean up ALL keyring locations
+    rm -f /usr/share/keyrings/clickhouse*.gpg \
+      /etc/apt/keyrings/clickhouse*.gpg \
+      /etc/apt/trusted.gpg.d/clickhouse*.gpg 2>/dev/null || true
     ;;
   esac
 
-  # Clean up old repositories
+  # Clean up old repository files (both .list and .sources)
   cleanup_old_repo_files "$repo_name"
 
   return 0
@@ -2515,9 +2561,14 @@ function setup_java() {
   DISTRO_CODENAME=$(awk -F= '/VERSION_CODENAME/ { print $2 }' /etc/os-release)
   local DESIRED_PACKAGE="temurin-${JAVA_VERSION}-jdk"
 
+  # Clean up ALL old Adoptium repo configs and keyrings before setup
+  cleanup_old_repo_files "adoptium"
+  rm -f /usr/share/keyrings/adoptium*.gpg \
+    /etc/apt/keyrings/adoptium*.gpg \
+    /etc/apt/trusted.gpg.d/adoptium*.gpg 2>/dev/null || true
+
   # Add repo if needed
   if [[ ! -f /etc/apt/sources.list.d/adoptium.sources ]]; then
-    cleanup_old_repo_files "adoptium"
     local SUITE
     SUITE=$(get_fallback_suite "$DISTRO_ID" "$DISTRO_CODENAME" "https://packages.adoptium.net/artifactory/deb")
     setup_deb822_repo \
@@ -2761,6 +2812,12 @@ setup_mariadb() {
   # Scenario 3: Fresh install or version change
   msg_info "Setup MariaDB $MARIADB_VERSION"
 
+  # Clean up ALL old MariaDB repo configs and keyrings before setup
+  cleanup_old_repo_files "mariadb"
+  rm -f /usr/share/keyrings/mariadb*.gpg \
+    /etc/apt/keyrings/mariadb*.gpg \
+    /etc/apt/trusted.gpg.d/mariadb*.gpg 2>/dev/null || true
+
   # Ensure APT is working before proceeding
   ensure_apt_working || return 1
 
@@ -2877,6 +2934,12 @@ function setup_mongodb() {
 
   cleanup_orphaned_sources
 
+  # Clean up ALL old MongoDB repo configs and keyrings before setup
+  cleanup_old_repo_files "mongodb"
+  rm -f /usr/share/keyrings/mongodb*.gpg \
+    /etc/apt/keyrings/mongodb*.gpg \
+    /etc/apt/trusted.gpg.d/mongodb*.gpg 2>/dev/null || true
+
   # Setup repository
   manage_tool_repository "mongodb" "$MONGO_VERSION" "$MONGO_BASE_URL" \
     "https://www.mongodb.org/static/pgp/server-${MONGO_VERSION}.asc" || {
@@ -2896,6 +2959,12 @@ function setup_mongodb() {
     return 1
   }
 
+  # Verify MongoDB was installed correctly
+  if ! command -v mongod >/dev/null 2>&1; then
+    msg_error "MongoDB binary not found after installation"
+    return 1
+  fi
+
   mkdir -p /var/lib/mongodb
   chown -R mongodb:mongodb /var/lib/mongodb
 
@@ -2903,8 +2972,15 @@ function setup_mongodb() {
     msg_warn "Failed to enable mongod service"
   }
   safe_service_restart mongod
-  cache_installed_version "mongodb" "$MONGO_VERSION"
 
+  # Verify MongoDB version
+  local INSTALLED_VERSION
+  INSTALLED_VERSION=$(mongod --version 2>/dev/null | grep -oP 'db version v\K[0-9]+\.[0-9]+' | head -n1 || echo "0.0")
+  if [[ "${INSTALLED_VERSION%%.*}" != "${MONGO_VERSION%%.*}" ]]; then
+    msg_warn "MongoDB version mismatch: expected $MONGO_VERSION, got $INSTALLED_VERSION"
+  fi
+
+  cache_installed_version "mongodb" "$MONGO_VERSION"
   msg_ok "Setup MongoDB $MONGO_VERSION"
 }
 
@@ -2952,12 +3028,16 @@ function setup_mysql() {
     msg_info "Setup MySQL $MYSQL_VERSION"
   fi
 
+  # Clean up ALL old MySQL repo configs and keyrings before setup
+  cleanup_old_repo_files "mysql"
+  rm -f /usr/share/keyrings/mysql*.gpg \
+    /etc/apt/keyrings/mysql*.gpg \
+    /etc/apt/trusted.gpg.d/mysql*.gpg 2>/dev/null || true
+
   # Debian 13+ Fix: MySQL 8.0 incompatible with libaio1t64, use 8.4 LTS
   if [[ "$DISTRO_ID" == "debian" && "$DISTRO_CODENAME" =~ ^(trixie|forky|sid)$ ]]; then
     msg_info "Debian ${DISTRO_CODENAME} detected → using MySQL 8.4 LTS (libaio1t64 compatible)"
 
-    cleanup_old_repo_files "mysql"
-
     if ! curl -fsSL https://repo.mysql.com/RPM-GPG-KEY-mysql-2023 | gpg --dearmor -o /etc/apt/keyrings/mysql.gpg 2>/dev/null; then
       msg_error "Failed to import MySQL GPG key"
       return 1
@@ -3300,14 +3380,23 @@ function setup_php() {
     # Scenario 2: Different version installed - clean upgrade
     if [[ -n "$CURRENT_PHP" && "$CURRENT_PHP" != "$PHP_VERSION" ]]; then
       msg_info "Upgrade PHP from $CURRENT_PHP to $PHP_VERSION"
-      # Stop old PHP-FPM if running
+      # Stop and disable ALL PHP-FPM versions (not just current one)
-      $STD systemctl stop "php${CURRENT_PHP}-fpm" >/dev/null 2>&1 || true
+      for fpm_service in $(systemctl list-units --type=service --all 2>/dev/null | grep -oE 'php[0-9]+\.[0-9]+-fpm' | sort -u); do
-      $STD systemctl disable "php${CURRENT_PHP}-fpm" >/dev/null 2>&1 || true
+        $STD systemctl stop "$fpm_service" >/dev/null 2>&1 || true
+        $STD systemctl disable "$fpm_service" >/dev/null 2>&1 || true
+      done
       remove_old_tool_version "php"
     else
       msg_info "Setup PHP $PHP_VERSION"
     fi
 
+    # Clean up ALL old PHP repo configs and keyrings before setup
+    cleanup_old_repo_files "php"
+    rm -f /usr/share/keyrings/deb.sury.org-php.gpg \
+      /usr/share/keyrings/php*.gpg \
+      /etc/apt/keyrings/php*.gpg \
+      /etc/apt/trusted.gpg.d/php*.gpg 2>/dev/null || true
+
     # Setup Sury repository
     manage_tool_repository "php" "$PHP_VERSION" "" "https://packages.sury.org/debsuryorg-archive-keyring.deb" || {
       msg_error "Failed to setup PHP repository"
@@ -3441,6 +3530,15 @@ function setup_postgresql() {
 
   # Scenario 3: Fresh install or after removal - setup repo and install
   cleanup_old_repo_files "pgdg"
+  cleanup_old_repo_files "postgresql"
+
+  # Clean up ALL old PostgreSQL repo configs and keyrings before setup
+  rm -f /usr/share/keyrings/postgresql*.gpg \
+    /usr/share/keyrings/pgdg*.gpg \
+    /etc/apt/keyrings/postgresql*.gpg \
+    /etc/apt/keyrings/pgdg*.gpg \
+    /etc/apt/trusted.gpg.d/postgresql*.gpg \
+    /etc/apt/trusted.gpg.d/pgdg*.gpg 2>/dev/null || true
 
   local SUITE
   case "$DISTRO_CODENAME" in
@@ -3798,6 +3896,12 @@ function setup_clickhouse() {
 
   ensure_dependencies apt-transport-https ca-certificates dirmngr gnupg
 
+  # Clean up ALL old ClickHouse repo configs and keyrings before setup
+  cleanup_old_repo_files "clickhouse"
+  rm -f /usr/share/keyrings/clickhouse*.gpg \
+    /etc/apt/keyrings/clickhouse*.gpg \
+    /etc/apt/trusted.gpg.d/clickhouse*.gpg 2>/dev/null || true
+
   # Setup repository (ClickHouse uses 'stable' suite)
   setup_deb822_repo \
     "clickhouse" \